pFind Studio: a computational solution for mass spectrometry-based proteomics

Applications (User Publications)



2025




A comprehensive investigation of the impact of cross-linker backbone structure on protein dynamics analysis: A case study with Pin1
Talanta2025. Qiao, Zichun et al. tate Key Laboratory of Medical Proteomics, CAS Key Laboratory of Separation Science for Analytical Chemistry, National
ABSTRACT:
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Dynamic PRC1–CBX8 stabilizes a porous structure of chromatin condensates
Nature Structural & Molecular Biology2025. et al. Department of Biochemistry and Molecular Biology, Biomedicine Discovery Institute, Faculty of Medicine, Nursing and Health Sciences, Monash University, Clayton, Victoria, Australia
ABSTRACT:
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Molecular basis for the regulation of human phosphorylase kinase by phosphorylation and Ca2+
Nature Communications.2025. Ma, Ruifang et al. Shenzhen Key Laboratory of Biomolecular Assembling and Regulation, School of Life Sciences, Southern University of Science and Technology, Shenzhen, 518055, China
ABSTRACT:
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Mapping Binding Domains of Viral and Allergenic Proteins with Dual-Cleavable Cross-Linking Technology
Journal of the American Society for Mass Spectrometry2025. Talukder, Akash et al. Department of Chemistry and Biochemistry, University of Texas at Arlington, Arlington, Texas 76019, United States
ABSTRACT:
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Structural basis for the asymmetric binding of coactivator SRC1 to FXR-RXR$\alpha$ and allosteric communication within the complex
Communications Biology2025. Sheng, Yanan et al. Division of Life Sciences and Medicine, University of Science and Technology of China, Hefei, 230026, China
ABSTRACT:
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In vitro reconstitution of meiotic DNA double-strand-break formation
Nature2025. Tang, Xinzhe et al. Key Laboratory of Multi-Cell Systems, Shanghai Key Laboratory of Molecular Andrology, Shanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, University of Chinese Academy of Sciences, Shanghai, China
ABSTRACT:
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Metal ion-enhanced ZIC-cHILIC StageTip for N-Glycoproteomic and Phosphoproteomic Profiling in EGFR-mutated Lung Cancer Cells
Molecular \& Cellular Proteomics2025. Chen, Yi-Ju et al. Institute of Chemistry, Academia Sinica, Taipei, Taiwan
ABSTRACT:
Use: pGlyco



Improving the Depth and Reliability of Glycopeptide Identification Using Protein Prospector
Molecular \& Cellular Proteomics2025. Chalkley, Robert J et al. Department of Pharmaceutical Chemistry, University of California, San Francisco, USA
ABSTRACT:
Use: pGlyco



Mitochondrial Proteome Reveals Metabolic Tuning by Restricted Insulin Signaling to Promote Longevity in Caenorhabditis elegans
Biology2025. Guo, Xuanxuan et al. School of Medicine, Zhejiang University, Hangzhou 310058, China 2 Key Laboratory of Growth Regulation and Translational Research of Zhejiang Province, School of Life Sciences, Westlake University, Hangzhou 310024, China
ABSTRACT:
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