pFind Studio: a computational solution for mass spectrometry-based proteomics

Applications (User Publications)



2025




A Compressed Sequence Tag Index for Fast Peptide Retrieval and Efficient Storage in Protein Identification Search Engines
Applied Sciences2025. Xie, Xiaoyu et al. School of Computer Science and Technology, Shandong University of Technology, Zibo 255000, China
ABSTRACT:
Use: pFind



In Vivo Ribosome-Amplified MetaBOlism, RAMBO, Effect Observed by Real Time Pulse Chase, RTPC, NMR Spectroscopy
Biochemistry2025. Yu, Jianchao et al. Department of Chemistry, University at Albany, State University of New York, Albany, New York 12222, United States
ABSTRACT:
Use: pFind; pLink



DeepMS: super-fast peptide identification using end-to-end deep learning method
Journal of Molecular Biology2025. Wei, Qianzhou et al. Key Laboratory of Functional Protein Research of Guangdong Higher Education Institutes and MOE Key Laboratory of Tumor Molecular Biology, Institute of Life and Health Engineering, Jinan University, Guangzhou 510632, China
ABSTRACT:
Use: pFind



Structure and mechanism of the Zorya anti-phage defence system
Nature2025. Hu, Haidai et al. Structural Biology of Molecular Machines Group, Protein Structure & Function Program, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark
ABSTRACT:
Use: pFind



Unraveling the Central Role of Global Regulator PprI in Deinococcus radiodurans Through Label-Free Quantitative Proteomics
Proteomes2025. Zhu, Siyu et al. School of Medical Technology, Beijing Institute of Technology, No. 5 Zhongguancun South Street, Beijing 100081, China
ABSTRACT:
Use: pFind; pQuant



CRAMP1-dependent histone H1 biogenesis is essential for topoisomerase II inhibitor tolerance
Molecular Cell2025. Ingham, Andreas et al. Protein Signaling Program, Novo Nordisk Foundation Center for Protein Research, University of Copenhagen, 2200 Copenhagen, Denmark
ABSTRACT:
Use: pFind



Ginsenoside Rg5 alleviates hypoxia-induced myocardial apoptosis by targeting STAT3 to promote Tyr705 phosphorylation
Chinese Medicine2025. Li, Fang-yang et al. School of Pharmacy, Guangdong Pharmaceutical University, Guang Zhou, 510006, China
ABSTRACT:
Use: pFind



A Compressed Sequence Tag Index for Fast Peptide Retrieval and Efficient Storage in Protein Identification Search Engines
Applied Sciences2025. Xie, Xiaoyu et al. School of Computer Science and Technology, Shandong University of Technology, Zibo 255000, China
ABSTRACT:
Use: pFind



Proteome-wide ligandability maps of drugs with diverse cysteine-reactive chemotypes
Nature Communications2025. Tian, Caiping et al. Guangzhou National Laboratory, Guangzhou International Bio Island, Guangzhou, China
ABSTRACT:
Use: pFind



Hypoxia-induced phase separation of ZHX2 alters chromatin looping to drive cancer metastasis
Molecular Cell2025. Gao, Chuan et al. Department of Urology, Medical Research Institute, Frontier Science Center for Immunology and Metabolism, Zhongnan Hospital of Wuhan University, Wuhan University, Wuhan 430071, China
ABSTRACT:
Use: pFind
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