Hao Chi 迟浩

Associate Professor

pFind Team

Center for Advanced Computing Research

Institute of Computing Technology, Chinese Academy of Sciences



Research

Computational Proteomics: algorithms and software tools for protein identification, de novo peptide sequencing and post-translational modification discovery


Education

2002-2006 Bachelor of Engineering, Computer Science and Technology, Jilin University.

2006-2013 Doctor of Engineering, Institute of Computing Technology, Chinese Academy of Sciences. Supervisor: Si-Min He


Honors

2013 The Special Prize of President Scholarship, CAS 中科院院长特别奖

2010 The First Award of Excellent Paper in the Institute of Computing Technology 中科院计算所优秀论文一等奖


Publications

1. Chi, H.; Sun, R. X.; Yang, B.; Song, C. Q.; Wang, L. H.; Liu, C.; Fu, Y.; Yuan, Z. F.; Wang, H. P.; He, S. M.; Dong, M. Q., pNovo: de novo peptide sequencing and identification using HCD spectra. J Proteome Res 2010, 9, (5), 2713-2724.

2. Chi, H.*; Chen*, H.; He, K.; Wu, L.; Yang, B.; Sun, R. X.; Liu, J.; Zeng, W. F.; Song, C. Q.; He, S. M.; Dong, M. Q., pNovo+: de novo peptide sequencing using complementary HCD and ETD tandem mass spectra. J Proteome Res 2013, 12, (2), 615-625. (Co-first author)

3. Li, Y. *; Chi, H.*; Wang, L. H.; Wang, H. P.; Fu, Y.; Yuan, Z. F.; Li, S. J.; Liu, Y. S.; Sun, R. X.; Zeng, R.; He, S. M., Speeding up tandem mass spectrometry based database searching by peptide and spectrum indexing. Rapid Commun Mass Spectrom 2010, 24, (6), 807-814. (Co-first author)

4. Zhao, Y.; Sun, W. *; Zhang, P.*; Chi, H. *; Zhang, M. J. *; Song, C. Q.; Ma, X.; Shang, Y.; Wang, B.; Hu, Y.; Hao, Z.; Huhmer, A. F.; Meng, F.; L'Hernault S, W.; He, S. M.; Dong, M. Q.; Miao, L., Nematode sperm maturation triggered by protease involves sperm-secreted serine protease inhibitor (Serpin). Proc Natl Acad Sci USA 2012, 109, (5), 1542-1547. (Co-second author)

5. Yang, B.; Wu, Y. J.; Zhu, M.; Fan, S. B.; Lin, J.; Zhang, K.; Li, S.; Chi, H.; Li, Y. X.; Chen, H. F.; Luo, S. K.; Ding, Y. H.; Wang, L. H.; Hao, Z.; Xiu, L. Y.; Chen, S.; Ye, K.; He, S. M.; Dong, M. Q., Identification of cross-linked peptides from complex samples. Nat Methods 2012, 9, (9), 904-906.

6. Sun, R. X.; Dong, M. Q.; Song, C. Q.; Chi, H.; Yang, B.; Xiu, L. Y.; Tao, L.; Jing, Z. Y.; Liu, C.; Wang, L. H.; Fu, Y.; He, S. M., Improved peptide identification for proteomic analysis based on comprehensive characterization of electron transfer dissociation spectra. J Proteome Res 2010, 9, (12), 6354-6367.

7. Wang, L.; Wang, W.; Chi, H.; Wu, Y.; Li, Y.; Fu, Y.; Zhou, C.; Sun, R.; Wang, H.; Liu, C.; Yuan, Z.; Xiu, L.; He, S. M., An efficient parallelization of phosphorylated peptide and protein identification. Rapid Commun Mass Spectrom 2010, 24, (12), 1791-1798.

8. Zhou, C.; Chi, H.; Wang, L. H.; Li, Y.; Wu, Y. J.; Fu, Y.; Sun, R. X.; He, S. M., Speeding up tandem mass spectrometry-based database searching by longest common prefix. BMC Bioinformatics 2010, 11, 577.


Address

Bioinformatics Group

Institute of Computing Technology, Chinese Academy of Sciences

No.6 Zhongguancun South Road, Beijing, China, 100190

Phone: + 86 010-62600822

Email: chihao@ict.ac.cn


北京市海淀区科学院南路6号 中国科学院计算技术研究所 生物信息学研究组 迟浩

邮编:100190



Last update: May 22, 2014