Hao Chi 迟浩

Associate Professor

pFind Team

Center for Advanced Computing Research

Institute of Computing Technology, Chinese Academy of Sciences



Research

Computational Proteomics: algorithms and software tools for protein identification, de novo peptide sequencing and post-translational modification discovery


Education

2002-2006 Bachelor of Engineering, Computer Science and Technology, Jilin University.

2006-2013 Doctor of Engineering, Institute of Computing Technology, Chinese Academy of Sciences. Supervisor: Si-Min He


Honors

2013 The Special Prize of President Scholarship, CAS 中科院院长特别奖 (<1%)

2010 The First Award of Excellent Paper in the Institute of Computing Technology 中科院计算所优秀论文一等奖


Publications

1.    Yang, H.; Chi, H.*; Zhou, W. J.; Zeng, W. F.; Liu, C.; Wang, R. M.; Wang, Z. W.; Niu, X. N.; Chen, Z. L.; He, S. M., pSite: Amino Acid Confidence Evaluation for Quality Control of De Novo Peptide Sequencing and Modification Site Localization. J Proteome Res 2018, 17 (1), 119-128.

2.    Yang, H.; Chi, H.*; Zhou, W. J.; Zeng, W. F.; He, K.; Liu, C.; Sun, R. X.; He, S. M., Open-pNovo: De Novo Peptide Sequencing with Thousands of Protein Modifications. J Proteome Res 2017, 16 (2), 645-654.

3.    Chi, H.; He, K.; Yang, B.; Chen, Z.; Sun, R. X.; Fan, S. B.; Zhang, K.; Liu, C.; Yuan, Z. F.; Wang, Q. H.; Liu, S. Q.; Dong, M. Q.; He, S. M., pFind-Alioth: A novel unrestricted database search algorithm to improve the interpretation of high-resolution MS/MS data. J Proteomics 2015, 125, 89-97.

4.    Chi, H.; Chen, H.; He, K.; Wu, L.; Yang, B.; Sun, R. X.; Liu, J.; Zeng, W. F.; Song, C. Q.; He, S. M.; Dong, M. Q., pNovo+: de novo peptide sequencing using complementary HCD and ETD tandem mass spectra. J Proteome Res 2013, 12 (2), 615-25.

5.    Chi, H.; Sun, R. X.; Yang, B.; Song, C. Q.; Wang, L. H.; Liu, C.; Fu, Y.; Yuan, Z. F.; Wang, H. P.; He, S. M.; Dong, M. Q., pNovo: de novo peptide sequencing and identification using HCD spectra. J Proteome Res 2010, 9 (5), 2713-24.

6.    Li, Y.; Chi, H.*; Wang, L. H.; Wang, H. P.; Fu, Y.; Yuan, Z. F.; Li, S. J.; Liu, Y. S.; Sun, R. X.; Zeng, R.; He, S. M., Speeding up tandem mass spectrometry based database searching by peptide and spectrum indexing. Rapid Commun Mass Spectrom 2010, 24 (6), 807-14.


Address

Bioinformatics Group

Institute of Computing Technology, Chinese Academy of Sciences

No.6 Zhongguancun South Road, Beijing, China, 100190

Phone: + 86 010-62600822

Email: chihao@ict.ac.cn


北京市海淀区科学院南路6号 中国科学院计算技术研究所 生物信息学研究组 迟浩

邮编:100190



Last update: June 05, 2018