pFind Studio: a computational solution for mass spectrometry-based proteomics

Applications (User Publications)



2025




Structural characterization of intra-and intermolecular disulfide bonds in voltage-dependent anion channel 3 (VDAC3) protein from Rattus norvegicus by high-resolution mass spectrometry
Analytical and Bioanalytical Chemistry2025. Pittal, Maria Gaetana Giovanna et al. Organic Mass Spectrometry Laboratory, Department of Chemical Sciences, University of Catania, Viale A. Doria 6, 95125, Catania, Italy
ABSTRACT:
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Expression of Enterocin A in Saccharomyces cerevisiae
Probiotics and Antimicrobial Proteins2025. Rossouw, Michelle et al. Department of Microbiology, Stellenbosch University, Private Bag X1, Matieland, 7602, South Africa
ABSTRACT:
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AlphaCross-XL: a seamless tool for automated and proteome-scale mapping of crosslinked peptides onto three-dimensional protein structures
Molecular & Cellular Proteomics.2025. Shenoy, Sanjyot Vinayak et al. Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, San Francisco, California, USA
ABSTRACT:
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Ultrafiltration-Enhanced Cross-Linking Mass Spectrometry for Comprehensive Analysis of Low Molecular Weight Protein Cross-Links
Analytical Chemistry2025. Zhang, Beirong et al. Regulatory Research Division, Biologic and Radiopharmaceutical Drugs Directorate, Health Products and Food Branch, Health Canada, Ottawa K1A 0K9, Ontario, Canada.
ABSTRACT:
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Evaluation of PE5 Entries on the Human Proteome Project Target List
Journal of Proteome Research2025. Zheng, Clarissa et al. Institute for Systems Biology, Seattle, Washington 98109, United States
ABSTRACT:
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Deciphering the MHC immunopeptidome of human cancers with Ligand. MHC atlas
Briefings in Bioinformatics2025. Ran, Zhi et al. Department of Orthopaedics, The Second Xiangya Hospital, Central South University, Changsha, Hunan 410011, China.
ABSTRACT:
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Ancient microbial DNA and proteins preserve in concretions covering human remains
Iscience2025. Bonucci, Biancamaria et al. Estonian Biocentre, Institute of Genomics, University of Tartu, Riia 23B, 51010 Tartu, Estonia
ABSTRACT:
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A novel recognition of the major allergen, Hum j 1, from Humulus japonicus pollen
World Allergy Organization Journal2025. Li, Qiong et al. Department of Pharmacy, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China
ABSTRACT:
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Bone adhered sediments as a source of target and environmental DNA and proteins
Molecular Biology and Evolution2025. de-Dios, Toni et al. Institute of Genomics, University of Tartu, Tartu 51010, Estonia
ABSTRACT:
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Uncovering Novel DPP-IV Inhibitory Peptides from Amphibian (Lithobates catesbeiana) Skin via Peptidomics and Molecular Simulation
Foods2025. Fang, Zongmu et al. Chaozhou Branch of Chemistry and Chemical Engineering Guangdong Laboratory, Chaozhou 521000, China
ABSTRACT:
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