pFind Studio: a computational solution for mass spectrometry-based proteomics

Applications (User Publications)



2024




Prosit-XL: enhanced cross-linked peptide identification by accurate fragment intensity prediction to study protein-protein interactions and protein structures
Nature Communication2024. Kalhor, Mostafa et al. Munich Data Science Institute, Technical University of Munich, Garching, Germany
ABSTRACT:
Use: pLink; pDeep



Multiple allostery in the regulation of PDGFR beta kinase activities: Allostery in PDGFRβ activity regulation
Acta Biochimica et Biophysica Sinica2024. Zhang, Yanfeng et al. School of Life Sciences, Tianjin University, Tianjin 300072, China
ABSTRACT:
Use: pLink



Itaconate protects ferroptotic neurons by alkylating GPx4 post stroke
Cell Death & Differentiation2024. Wei, Chao et al. Department of Neurobiology, School of Basic Medical Sciences, Capital Medical University
ABSTRACT:
Use: pFind



Do-it-yourself de novo antibody sequencing workflow that achieves complete accuracy of the variable regions
Journal of Proteome Research2024. He, Meng-Ting et al. National Institute of Biological Sciences, Beijing 102206, China
ABSTRACT:
Use: pFind; pNovo



Assessing fecal metaproteomics workflow and small protein recovery using DDA and DIA PASEF mass spectrometry
Microbiome research reports2024. Wang, Angela et al. Regulatory Research Division, Biologic and Radiopharmaceutical Drugs Directorate, Health Products and Food Branch, Health Canada, Ottawa K1A 0K9, Ontario, Canada.
ABSTRACT:
Use: pFind



Global Profiling Lysine Reactivity and Ligandability with Oxidant-Triggered Bioconjugation Chemistry
Angewandte Chemie2024. Zhou, Mengya et al. State Key Laboratory of Bioactive Molecules and Druggability Assessment, International Cooperative Laboratory of Traditional Chinese Medicine Modernization and Innovative Drug Development (MOE), School of Pharmacy, Jinan University, 601 Huangpu Avenue West, 510632 Guangzhou, China
ABSTRACT:
Use: pChem



Proteome-wide Ligand and Target Discovery by Using Strain-Enabled Cyclopropane Electrophiles
Journal of the American Chemical Society2024. Yue Liu et al. State Key Laboratory of Bioactive Molecules and Druggability Assessment, Jinan University, 601 Huangpu Avenue West, Guangzhou 510632, China
ABSTRACT:
Use: pChem



Catalyst-free late-stage functionalization to assemble $\alpha$-acyloxyenamide electrophiles for selectively profiling conserved lysine residues
Communications chemistry2024. Zhao, Yuanyuan et al. State Key Laboratory of Bioactive Molecules and Druggability Assessment, Jinan University, 601 Huangpu Avenue West, Guangzhou, 510632, China
ABSTRACT:
Use: pChem; pQuant



The De Novo Sequencing of Full-Length Amyloidogenic Light Chain By Peripheral Blood Mass Spectrometry
Blood2024. Guan, Ai et al. Department of Hematology, Peking Union Medical College Hospital, Beijing, China
ABSTRACT:
Use: pFind; pGlyco



Application of high-resolution liquid chromatography-mass spectrometry in chemical modification of proteins
Experimental Technology and Management2024. Huiling, WANG et al. School of Chemistry, Central China Normal University, Wuhan 430079, China
ABSTRACT:
Use: pFind
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